PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00205g00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 1157aa    MW: 129635 Da    PI: 9.0405
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00205g00120.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.2e-074883340
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                               W++e+  ++++a +++G++ Wk++a  +   Rt++++
  Peaxi162Scf00205g00120.1 48 EWSEEDLTRFYRAYRKYGKD-WKKVAVAVR-PRTAEMV 83
                              7*****************99.*****9999.8998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.7E-44593IPR001005SANT/Myb domain
SuperFamilySSF466892.92E-84592IPR009057Homeodomain-like
PfamPF002498.0E-64883IPR001005SANT/Myb domain
CDDcd001671.38E-54883No hitNo description
PfamPF065841.6E-32631731IPR033471DIRP domain
SMARTSM011351.0E-56631732IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1157 aa     Download sequence    Send to blast
MAPAKKSRSL NKRFPPSTEI SPSKDGSGDN LKKSLQRKRK LSDMLGPEWS EEDLTRFYRA  60
YRKYGKDWKK VAVAVRPRTA EMVEALYTMN RAYLSLPEGT ASVVGLIAMM TDHYCNLGAS  120
DSEQESYENG GTSRKPKKRA RGKVQPDISK TSEMASPTAT HGCLTLLKKK RSGGSRPRAV  180
GKRTPRFPVS FSYENPKGDE YFSPTRQGLK LQADDTDDDV KIALVLTEAS QRGGSPQVSK  240
TPNRRTSSAM SSPIETAKRK RVNMDMGNAK LLSSEVDEEE GSMEADTGEL FRYKNDLAET  300
GTTGRTAQKG RRHSGKKWEV DDSGDNHSDD IKEACSGTEE GQRLGAVRGK LEMEATDEKK  360
SRTSLQGPKK RSKKVLFRRD EGSAFDALQT LADLSLMMPT AENEDESRIQ VKDEVDDHVD  420
ESGSLEAVPA DKQRQKRGSA GVGSRWNQHL SKFEVASGTI SKHGKVTCTD AVPETKQVRR  480
AQKAMSSKAR KTEGHFNNSV IESLEAEAKE ASKKLTNKGK RSYQSVSPKI IKDQEHSSCA  540
DPRSERSDSA QSTAQISVAN QVNLPTKVRS RRKMDLKKPQ RQENMEIPDK SLDDTSASVA  600
ALHDRAFSRK KKISNYLSNH QVRRWCTYEW FYSAIDYPWF AKREFVEYLY HVGLGHVPRL  660
TRVEWGVIRS SLGKPRRFSE QFLSEEKEKL NQYRQSVRAH YTELREGTRE GLPTDLAKPL  720
SVGQRVIAIH PKTREIHDGS VLTVDHSRCR VQFDRPELGV EFVMDFDCMP LNPFENMPAL  780
LTRHADAVDK FFESFNERKV NVRANEYLKF QTGDIMENGD ISSHFSPPSL LNSNLLKQAK  840
VASAEADMQS KSGVMETITY QRTANSKPSG VAQIQAKEAD VLALAELTRA LDKKDAVVSE  900
LRRMNDDLLE SQKTNDCSLN DSEPFKKQYA AVLIQLNEVN DQVSSALYRL RQRNTYQGSI  960
PLAWPRPVPN FADPSGLSTF DCYTSQPQES GFLVNEIIES SKIKARTMVD AAMQAMLSLS  1020
GRENTTEKIE EAIDYAMLSF SGRDNTTKKI EEAIDYVNDR IPLDDSCMPT PPEPKSKNMP  1080
DRNEAEIPSE LITKCVATLL MIQKCTERQF PPADVAKVLD SSVASLQPCC SQNFPVYAEI  1140
QKCMGIIRNQ ILALIPT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2437181e-100AC243718.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-7h19 map 1, complete sequence.
GenBankHG9754401e-100HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-100HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595580.10.0PREDICTED: protein ALWAYS EARLY 3 isoform X1
RefseqXP_009595581.10.0PREDICTED: protein ALWAYS EARLY 3 isoform X1
TrEMBLK4AX040.0K4AX04_SOLLC; Uncharacterized protein
STRINGSolyc01g067560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding